Index of modules

ARKStep Time-Stepping Module for ODE systems in split, linearly-implicit form.

(Adjoint) Sensitivity analysis of DAEs with respect to their parameters.

(Adjoint) Sensitivity analysis of ODEs with respect to their parameters.

Low-level routines on arrays.

A generic nvector interface to Pthreads nvectors.

A generic nvector interface to OpenMP nvectors.

A generic nvector interface to mpiplusx nvectors.

A generic nvector interface to mpimany-vector nvectors.

A generic nvector interface to parallel nvectors.

A generic nvector interface to arbitrary array types.

A generic nvector interface to custom nvectors.

A generic nvector interface to many-vector nvectors.

A generic nvector interface to serial nvectors.

Adaptive-step time integration for stiff, nonstiff, and mixed stiff/nonstiff systems of ODE initial value problems with zero-crossing detection.

Parallel band-block-diagonal preconditioners for ARKODE (requires MPI).

General-purpose band matrix operations on arrays.

General purpose dense matrix operations on arrays.

Banded matrices

Banded preconditioners.

Banded preconditioners.

Banded preconditioners.

Butcher tables

Common definitions that are included in each of the time-stepping modules.

Installation specific constants.

Symbolic names for variable constraints.

Contexts for creating Sundials values using MPI

Contexts for creating Sundials values

Coupling coefficients between fast and slow time scales.

Custom nonlinear solvers.

Custom linear solvers.

Variable-step solution of ODE initial value problems with zero-crossing detection.

Parallel band-block-diagonal preconditioners for CVODE (requires MPI).

Sensitivity analysis (forward and adjoint) and quadrature equations for CVODE.

Parallel band-block-diagonal preconditioners for CVODES (requires MPI).

Nvector operations implemented in OCaml on mpiplusx payloads.

Nvector operations implemented in OCaml on mpimany-vector payloads.

Nvector operations on Nvector_parallel.data implemented in OCaml.

Standard operations over the underlying array.

Nvector operations implemented in OCaml on many-vector payloads.

Nvector operations on RealArrays implemented in OCaml.

Standard operations over the underlying data.

Dense matrices

Diagonal approximation of Jacobians by difference quotients.

Diagonal approximation of Jacobians by difference quotients.

Direct Linear Solvers

Direct Linear Solvers operating on dense, banded, and sparse matrices.

Direct Linear Solvers operating on dense, banded, and sparse matrices.

Direct Linear Solvers operating on dense, banded, and sparse matrices.

Direct mass matrix solvers

Direct Linear Solvers operating on dense, banded, and sparse matrices.

Common definitions for Direct Linear Solvers operating on dense, banded, and sparse matrices.

Direct Linear Solvers operating on dense, banded and sparse matrices.

Direct Linear Solvers operating on dense, banded, and sparse matrices.

Direct Linear Solvers operating on dense, banded, and sparse matrices.

ERKStep Time-Stepping Module for nonstiff initial value problems.

Generic nonlinear solver for fixed-point (functional) iteration with optional Anderson acceleration.

Variable-step solution of DAE initial value problems with zero-crossing detection.

Parallel band-block-diagonal preconditioners for IDA (requires MPI).

Sensitivity analysis (forward and adjoint) and quadrature equations for IDA.

Parallel band-block-diagonal preconditioners for IDAS (requires MPI).

Index values for sparse matrices.

Integrators for problems on the MRIStep fast time-scale.

Iterative Linear Solvers

Solves nonlinear systems using Newton-Krylov techniques.

Parallel band-block-diagonal preconditioners for KINSOL (requires MPI).

KLU direct linear solver operating on sparse matrices (requires KLU).

Generic linear solvers.

Vectors of integers (one-dimensional bigarrays).

Compute the task-local portions of certain operations.

Compute the task-local portions of certain operations.

A rudimentary interface to C streams for logging in Sundials.

MRIStep Time-Stepping Module for two-rate initial value problems.

Produce a custom nvector from basic operations on an underlying array.

Lifts a set of operations on a type t to a set of operations on a generic nvector payload.

Produce a set of parallel Nvector.NVECTOR_OPS from basic operations on an underlying array.

Turn a set of Nvector_custom.nvector_ops into an nvector module.

Mass Matrix Solvers

Generic matrices.

Generic nonlinear solver based on Newton's method.

Generic nonlinear solvers.

Generic nvector types and operations.

A custom nvector based on float arrays.

An interface for creating custom nvectors in OCaml.

The standard many-vector nvectors of Sundials.

The standard mpimany-vector nvectors of Sundials.

The standard mpiplusx nvectors of Sundials.

The OpenMP nvectors of Sundials (requires OpenMP).

The standard parallel nvectors of Sundials (requires MPI).

The Pthreads nvectors of Sundials (requires pthreads).

Standard serial nvectors of Sundials.

Underlyling nvector operations on Pthreads nvectors.

Underlying nvector operations on OpenMP nvectors.

Underlying nvector operations on mpiplusx nvectors.

Underlying nvector operations on mpimany-vector nvectors.

Underlying nvector operations on parallel nvectors.

Standard operations over array nvectors.

Underlying nvector operations on many-vector nvectors.

Underlying nvector operations on serial nvectors.

Standard operations over nvectors.

Operations on any type of nvector.

Performance profiling using MPI

Performance profiling

Support for backward quadrature equations that may or may not depend on forward sensitivities.

Support for quadrature sensitivity equations.

Integration of pure quadrature equations.

Support for backward quadrature equations that may or may not depend on forward sensitivities.

Support for quadrature sensitivity equations.

Integration of pure quadrature equations.

Read-only polymorphic arrays.

Vectors of floats (one-dimensional bigarrays).

Matrices of floats (two-dimensional bigarrays plus extra information for Sundials.

Vectors of root (zero-crossing) directions.

Vectors of root (zero-crossing) statuses.

Support for nonlinear solvers with sensitivities.

(Forward) Sensitivity analysis of DAEs with respect to their parameters.

(Forward) Sensitivity analysis of ODEs with respect to their parameters.

A limited interface to arrays of Nvector.nvectors required to apply nonlinear solvers to sensitivity problems.

Sparse matrices

Scaled Preconditioned Iterative Linear Solvers

Scaled Preconditioned Iterative Linear Solvers.

Scaled Preconditioned Iterative Linear Solvers.

Iterative mass matrix solvers

Scaled Preconditioned Iterative Linear Solvers.

Common definitions for Scaled Preconditioned Iterative Linear Solvers.

Scaled Preconditioned Iterative Linear Solvers.

Scaled Preconditioned Iterative Linear Solvers.

Scaled Preconditioned Iterative Linear Solvers.

Generic definitions, arrays, matrices, linear solvers, nonlinear solvers, and utility functions.

Information on Sundials/ML and the underlying Sundials library.

Index values for sparse matrices.

Generic linear solvers.

Arrays of integers.

Generic matrices.

Generic nonlinear solvers.

Read-only polymorphic arrays.

Arrays of flaoting-point values.

Generic definitions for use with MPI.

SuperLUMT direct linear solver operating on sparse matrices (requires SuperLUMT).

Shared definitions and miscellaneous utility functions.

Symbolic names for constants used when calculating initial values or supressing local error tests.